SAVoR: Annotation and Visualization of RNA structures

Fan Li, Paul Ryvkin, Micah Childress, Otto Valladares, Brian Gregory, Li-San Wang

The Sequencing Annotation and Visualization of RNA structures (SAVoR) web server links RNA structure predictions with sequencing data and genomic annotations to produce highly informative and annotated models of RNA secondary structure. SAVoR accepts read alignment data from RNA-seq experiments, computes a series of per-base values such as read abundance and sequence variant frequency, and then projects these values onto a customizable secondary structure model. Here, we present recent updates to SAVoR that include additional modes of annotation, structure prediction, and visualization, as well as an improved user interface and batch mode option.

BioVis 2013 Information

NetGestalt: integrating multidimensional omics data over biological networksImportance Driven Visualization of Molecular SurfacesA High-Throughput Cell Analysis System to Determine Chromosome Territory Boundaries and Spatial OrganizationSAVoR: Annotation and Visualization of RNA structuresGlom: Image Segmentation for Glomerular CountingVisualizing Microbial Ecology Data for Public and Scientific Audiences