Papers & Abstracts

BioVis 2011 Presenters: We have prepared BioVis slide templates, which are available in light and dark for both normal and widescreen displays. Projectors at BioVis will support both formats. More details about projection and AV are available on the VisWeek website.

BioVis 2011 Proceedings

GenAMap: Visualization Strategies for Structured Association Mapping Ross Curtis, Peter Kinnaird, Eric Xing

A Visual Analysis System for Metabolomics Data Philip Livengood, Ross Maciejewski, Wei Chen, David Ebert

The Galaxy Track Browser: Transforming the Genome Browser from Visualization Tool to Analysis Tool Jeremy Goecks, Kanwei Li, Dave Clements, James Taylor

TIALA - Time Series Alignment Analysis Günter Jäger, Florian Battke, Kay Nieselt

MDMap : A System for Data-driven Layout and Exploration of Molecular Dynamics Simulations Robert Patro, Cheuk Yiu Ip, Sujal Bista, Samuel Cho, D. Thirumalai, Amitabh Varshney

Evaluating the VIPER pedigree visualisation: detecting inheritance inconsistencies in genotyped pedigrees. Trevor Paterson, Martin Graham, Jessie Kennedy, Andy Law

Fiber Stippling: An Illustrative Rendering for Probabilistic Diffusion Tractography Mathias Goldau, Alexander Wiebel, Nico Stephan Gorbach, Corina Melzer, Mario Hlawitschka, Gerik Scheuermann, Marc Tittgemeyer

Parallel Contour-Buildup Algorithm for the Molecular Surface Michael Krone, Sebastian Grottel, Thomas Ertl

Visualization of Anisotropic Contact Potentials within Protein Structures Corinna Vehlow, Bernhard Preim, Michael Lappe

Visual Exploration of Microbial Populations Sara Johansson Fernstad, Jimmy Johansson, Suzi Adams, Jane Shaw, David Taylor

Quick2Insight: A User-Friendly Framework for Interactive Rendering of Biological Image Volumes Yanling Liu, Curtis Lisle, Jack Collins

Visual Analysis of Next-Generation Sequencing Data to Detect Overlapping Genes in Bacterial Genomes Svenja Simon, Daniela Oelke, Richard Landstorfer, Klaus Neuhaus, Daniel A. Keim

Visualizing Virus Population Variability From Next Generation Sequencing Data Michael Correll, Subhadip Ghosh, David O'Connor, Michael Gleicher

Metrics for Comparing Explicit Representations of Interconnected Biological Networks David Mayerich, Chris Bjornsson, Jonothan Taylor, Badrinath Roysam

RuleBender: Integrated Visualization for Biochemical Rule-Based Modeling Adam M. Smith, Wen Xu, Yao Sun, James R. Faeder, G. Elisabeta Marai

iHAT: interactive Hierarchical Aggregation Table Corinna Vehlow, Julian Heinrich, Florian Battke, Daniel Weiskopf, Kay Nieselt

Semantically Steered Visual Analysis of Highly Detailed Morphometric Shape Spaces Max Hermann, Anja C. Schunke, Reinhard Klein

Modeling and Visualization of Receptor Clustering on the Cellular Membrane Martin Falk, Markus Daub, Guido Schneider, Thomas Ertl

HiTSEE: A Visualization Tool for Hit Selection and Analysis in High-Throughput Screening Experiments Enrico Bertini, Hendrik Strobelt, Joachim Braun, Oliver Deussen, Ulrich Groth, Thomas U. Mayer, Dorit Merhof

EVEVis: A Multi-Scale Visualization System for Dense Evolutionary Data Robert Miller, Vadim Mozhayskiy, Ilias Tagkopoulos, Kwan-Liu Ma

Accepted Abstracts

NGS Explorer: An Application for Visually Contextualizing and Interrogating Multivariate Omics Data Georg Tremmel, Atsushi Niida, Yuichi Shiraishi, Masao Nagasaki, Satoru Miyano

Cell Illustrator/JS: Social Systems Biology Georg Tremmel, Ayumu Saito, Chen Li, Shin Suzuki, Emi Ikeda, Atsushi Niida, Satoru Miyano, Masao Nagasaki

Navigation and Exploration System for Stem Cell Image Data Ishwar Kulkarni, Shanaz Mistry, Brian Cummings, M. Gopi

Seqeyes: A multi-scale interactive visualization tool for structural variations Richard Park, Nils Gehlenborg, Peter Park

Analysis-Ready Meshes of Neuronal Forests John Edwards, Chandrajit Bajaj, Justin Kinney, Terrence Sejnowski, Tom Bartol, Daniel Johnston, Kristen Harris

DCE-MRI-oriented Volume Rendering for Monitoring of Crohn’s Disease Alexander Wiebel, Hans-Christian Hege, Manon L. W. Ziech, Matthan W. A. Caan, Jaap Stoker, Frans M. Vos

FoldSynth: A physics-based interactive visualisation platform for proteins and other molecular strands Peter Todd, Stephen Todd, Frederic Fol Leymarie, William Latham, Benjamin Jefferys, Lawrence Kelley

Toward Systems-Level Visualizations of Molecular Networks on Large-Scale, High-Resolution Displays Jillian Aurisano, James A. Radosevich, Jason Leigh

3D Reconstruction and Visualization of the Developing Drosophila Wing Imaginal Disc at Cellular Resolution Linge Bai, Thomas Widmann, Frank Juelicher, Christian Dahmann, David Breen

Interactive visualization of multiscale biomedical data: an integrated approach Debora Testi, Gordon Clapworthy, Stephen Aylward, Alejandro Frangi, Richard Christie

Reconstructing Neural Structures from Sparse User Scribbles Mike Roberts, Won-Ki Jeong, Amelio Vazquez-Reina, Markus Unger, Horst Bischof, Jeff Lichtman, Hanspeter Pfister

Visualizing Global Correlation in Large-Scale Molecular Biological Data A.N.M. Choudhury, Kristin Potter, Theresa-Marie Rhyne, Yarden Livnat, Chris Johnson, Orly Alter

VESPA: Visual Exploration and Statistics to Promote Annotation for Prokaryotic Genomes Bobbie-Jo Webb-Robertson, Elena Peterson, Jeffrey Jensen, Mark Kobold, Hyunjoo Walker, William Cannon, Lee Ann McCue

Visualizing Genetic Transmission Patterns in Plant Pedigrees Paul Shaw, Jessie Kennedy, Martin Graham, Iain Milne, David Marshall

CluMa-GO: Bring Gene Ontologies and Hierarchical Clusterings Together Andreas Kerren, Ilir Jusufi, Vladyslav Aleksakhin, Falk Schreiber

Animating Cell Biology for Research and Teaching Janet Iwasa

3D Reconstruction and Analysis of Bat Flight Maneuvers from Sparse Multiple View Video Attila Bergou, Sharon Swartz, Kenneth Breuer, Gabriel Taubin

Visualization of experimental design & workflows in biological experiments Eamonn Maguire, Philippe Rocca-Serra, Min Chen, Susanna-Assunta Sansone

Spatially Continuous Change of Abstraction in Molecular Visualization Wouter Lueks, Ivan Viola, Matthew van der Zwan, Henk Bekker, Tobias Isenberg

Fast Tracing of Microtubule Centerlines in Electron Tomograms Britta Weber, Marit Möller, Jean-Marc Verbavatz, Daniel Baum, Hans-Christian Hege, Steffen Prohaska

Light Microscopy-Based Reconstruction and Interactive Structural Analysis of Cortical Neural Networks Vincent J. Dercksen, Marcel Oberlaender, Bert Sakmann, Hans-Christian Hege

KnomePathways: A Tool to View and Query Gene Interaction Networks in Individual Human Genomes Adem Albayrak, Harish Mahadevan, James D'Augustine, Nathaniel Pearson

G-nome Surfer: a Tabletop Interface for Collaborative Exploration of Genomic Visualization Orit Shaer, Megan Strait, Consuelo Valdes, Taili Feng, Mikey Lintz, Heidi Wang

FvNano: A Virtual Laboratory to Manipulate Molecular Systems Matthieu Chavent, Marc Piuzzi, Alex Tek, Marc Baaden

Lessons Learned from Tool Development for Animal Movement Analysis Florian Mansmann, David Spretke, Halldor Janetzko

InBox: In-situ Multiple-Selection and Multiple-View Exploration of Diffusion tensor MRI Visualization Haipeng Cai, Jian Chen, Alexander P. Auchus, Stephen Correia, David H. Laidlaw