Papers & Posters

The New UCSC Cancer Genomics Browser

Brian Craft, Teresa Swatloski, Mary Goldman, Kyle Ellrott, Singer Ma, Chris Wilks, Josh Stuart, David Haussler, Jing Zhu

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Volume Visualization of Serial Electron Microscopy Images Using Local Variance

David Mayerich, John Hart

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enRoute: Dynamic Path Extraction from Biological Pathway Maps for In-Depth Experimental Data Analysis

Christian Partl, Alexander Lex, Marc Streit, Denis Kalkofen, Karl Kashofer, Dieter Schmalstieg

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MaTSE: The Microarray Time-Series Explorer

Paul Craig, Alan Cannon, Robert Kukla, Jessie Kennedy

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Epithelial Cell Reconstruction and Visualization of the Developing Drosophila Wing Imaginal Disc

David Breen, Thomas Widmann, Linge Bai, Frank Julicher, Christian Dahmann

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INCIDE the Brain of a Bee: Visualising Honeybee Brain Activity in Real Time by Semantic Segmentation

Martin Strauch, Marc P. Broeg, Clemens Müthing, Paul Szyszka, Oliver Deussen, C. Giovanni Galizia, Dorit Merhof

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ADVISe: Visualizing the dynamics of enzyme annotations in UniProt/SwissProt

Sabrina Silveira, Artur Rodrigues, Raquel Melo-Minardi, Carlos Silveira, Wagner Meira Jr

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Gene-RiViT: A visualization tool for comparative analysis of gene neighborhoods in prokaryotes

Adam Price, Robert Kosara, Cynthia Gibas

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Implicit Surfaces for Interactive Graph Based Cavity Analysis of Molecular Simulations

Julius Parulek, Cagatay Turkay, Nathalie Reuter, Ivan Viola

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Towards real-time visualization of detailed neural tissue models: view frustum culling for parallel rendering

Juan Hernando, Felix Schürmann, Luis Pastor

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Visualizing Cells and their Connectivity Graphs for CompuCell3D

Randy Heiland, Maciek Swat, James Sluka, Benjamin Zaitlen, Abbas Shirinifard, Gilberto Thomas, Andrew Lumsdaine, James Glazier

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Uncertainty-Aware Visual Analysis of Biochemical Reaction Networks

Corinna Vehlow, Jan Hasenauer, Andrei Kramer, Julian Heinrich, Nicole Radde, Frank Allgoewer, Daniel Weiskopf

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Interactive Extraction of Neural Structures with User-Guided Morphological Diffusion

Yong Wan, Hideo Otsuna, Chi-Bin Chien, Charles Hansen

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mzRepeat: Visual Analysis of Lipids in Mass Spectrometry

Shinichi Mukosaka, Kanae Teramoto, Hideki Koike

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Dynamic Channels in Biomolecular Systems: Path Analysis and Visualization

Norbert Lindow, Daniel Baum, Ana-Nicoleta Bondar, Hans-Christian Hege

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Heterogeneity-based Guidance for Exploring Multiscale Data in Systems Biology

Martin Luboschik, Carsten Maus, Hans-Jörg Schulz, Heidrun Schumann, Adelinde Uhrmacher

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Similarity Analysis of Cell Movements in Video Microscopy

Jens Fangerau, Burkhard Höckendorf, Joachim Wittbrodt, Heike Leitte

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User-guided Segmentation of Thoracic Computed Tomography Data for Electrical Impedance Tomography Image Reconstruction

Peter Salz, Andreas Reske, Hermann Wrigge, Gerik Scheuermann, Hans Hagen

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Visualization and Exploration of 3D Toponome Data

Steffen Oeltze, Paul Klemm, Reyk Hillert, Bernhard Preim, Walter Schubert

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Tractography in Context: Multimodal Visualization of Probabilistic Tractograms in Anatomical Context

Anne Berres, Mathias Goldau, Marc Tittgemeyer, Gerik Scheuermann, Hans Hagen

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Using a Mathematical Graph Framework for Visualization of Inheritance Patterns in Commercial Plant Pedigrees

Paul D. Shaw, Jessie Kennedy, Iain Milne, Martin Graham, David F. Marshall

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Extending The Grammar of Graphics for Biological Data Visualization

Tengfei Yin, Dianne Cook, Michael Lawrence

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compreheNGSive: A Tool for Exploring Next-Gen Sequencing Variants

Alex Bigelow, Miriah Meyer, Nicola Camp

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MedSavant: Visual Analytics for Genetic Variation Datasets

Marc Fiume, Eric Smith, Andrew Brook, Michael Brudno

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Bulk Synchronous Visualization

Lars Ailo Bongo

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Getting Into Visualization of Large Biological Data Sets

Martin Krzywinski, Inanc Birol, Steven Jones, Marco Marra

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Aracari: exploration of eQTL data through visualization

Ryo Sakai, Christopher Bartlett, Dusan Popovic, William Ray, Jan Aerts

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An Abstract View of Associations Between Diseases and Developmental Gene Sets

Jisoo Park, Keith Noto, Daniel Kee, Heather Wick, Donna Slonim

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Can Adjacency Matrices help in the exploration and understanding of Multi-Omics Data?

Georg Tremmel, Atsushi Niida, Satoru Miyano

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StratomeX: Enabling Visualization-Driven Cancer Subtype Analysis

Alexander Lex, Marc Streit, Hans-Joerg Schulz, Christian Partl, Dieter Schmalstieg, Peter J. Park, Nils Gehlenborg

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GenomeRing: alignment visualization based on SuperGenome coordinates

Alexander Herbig, Günter Jäger, Florian Battke, Kay Nieselt

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Scalable Interactive Analysis of Retinal Astrocyte Networks

Panuakdet Suwannatat, Gabriel Luna, Geoffrey P. Lewis, Steven K. Fisher, Tobias Ho ̈llerer

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Visual Analysis of Genome-wide Tracts of Homozygosity

Sean Reber, Ye Zhao, Li Zhang, Mohammed Orloff, Charis Eng

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